SRX028632
GSM588927: AP-2γ ChIP sequencing in ETOH (ethanol) treated MCF-7 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7 breast cancer cell line
agent
ethanol
antibody
anti-AP-2γ
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM588927: AP-2γ ChIP sequencing in ETOH (ethanol) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17067787
Reads aligned (%)
91.7
Duplicates removed (%)
3.8
Number of peaks
22554 (qval < 1E-05)

hg19

Number of total reads
17067787
Reads aligned (%)
91.0
Duplicates removed (%)
4.6
Number of peaks
22631 (qval < 1E-05)

Base call quality data from DBCLS SRA