SRX028629
GSM580756: Stat3 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Stat3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
strain
C57BL/6
cell type
CD4+ T cells stimulated by IL-6 and IL23
chip antibody
phospho-Stat3 (14-6727, ebiosciences, CA)

Sequenced DNA Library

library_name
GSM580756: Stat3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15175179
Reads aligned (%)
30.5
Duplicates removed (%)
8.2
Number of peaks
759 (qval < 1E-05)

mm9

Number of total reads
15175179
Reads aligned (%)
30.4
Duplicates removed (%)
8.5
Number of peaks
780 (qval < 1E-05)

Base call quality data from DBCLS SRA