SRX028593
GSM607493: H3K9me3 K562 ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2008-05-30
chip antibody
CST rabbit anti-H3K9me3
vendor
Cell Signaling Technology

Sequenced DNA Library

library_name
GSM607493: H3K9me3_K562_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
55991440
Reads aligned (%)
92.8
Duplicates removed (%)
11.1
Number of peaks
2164 (qval < 1E-05)

hg19

Number of total reads
55991440
Reads aligned (%)
91.9
Duplicates removed (%)
12.7
Number of peaks
2077 (qval < 1E-05)

Base call quality data from DBCLS SRA