SRX028592
GSM607492: KAP1 K562 ChIP-seq rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRIM28

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2010-04-22
chip antibody
abcam goat anti-KAP1
vendor
Abcam

Sequenced DNA Library

library_name
GSM607492: KAP1_K562_ChIP-seq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
18112713
Reads aligned (%)
72.5
Duplicates removed (%)
18.3
Number of peaks
1554 (qval < 1E-05)

hg38

Number of total reads
18112713
Reads aligned (%)
74.0
Duplicates removed (%)
17.3
Number of peaks
1505 (qval < 1E-05)

Base call quality data from DBCLS SRA