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For hg19
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TRIM28
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX028592
GSM607492: KAP1 K562 ChIP-seq rep2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TRIM28
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2010-04-22
chip antibody
abcam goat anti-KAP1
vendor
Abcam
Sequenced DNA Library
library_name
GSM607492: KAP1_K562_ChIP-seq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
18112713
Reads aligned (%)
72.5
Duplicates removed (%)
18.3
Number of peaks
1554 (qval < 1E-05)
hg38
Number of total reads
18112713
Reads aligned (%)
74.0
Duplicates removed (%)
17.3
Number of peaks
1505 (qval < 1E-05)
Base call quality data from
DBCLS SRA