SRX028591
GSM607491: KAP1 K562 ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRIM28

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2008-05-30
chip antibody
abcam goat anti-KAP1
vendor
Abcam

Sequenced DNA Library

library_name
GSM607491: KAP1_K562_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52484092
Reads aligned (%)
32.0
Duplicates removed (%)
14.1
Number of peaks
1938 (qval < 1E-05)

hg19

Number of total reads
52484092
Reads aligned (%)
31.4
Duplicates removed (%)
15.2
Number of peaks
1916 (qval < 1E-05)

Base call quality data from DBCLS SRA