SRX028589
GSM607489: SetDB1 K562 ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SETDB1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2008-05-30
chip antibody
Proteintech group rabbit anti-SetDB1
vendor
Proteintech Group

Sequenced DNA Library

library_name
GSM607489: SetDB1_K562_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40950582
Reads aligned (%)
35.0
Duplicates removed (%)
6.5
Number of peaks
2621 (qval < 1E-05)

hg19

Number of total reads
40950582
Reads aligned (%)
34.7
Duplicates removed (%)
7.3
Number of peaks
2594 (qval < 1E-05)

Base call quality data from DBCLS SRA