SRX028584
GSM607484: ZNF274 HepG2 ChIP-seq rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF274

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
hepatocellular carcinoma
cell line
HepG2
harvest date
2010-03-16
chip antibody
abnova mouse polyclonal anti-ZNF274
vendor
Abnova

Sequenced DNA Library

library_name
GSM607484: ZNF274_HepG2_ChIP-seq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23682993
Reads aligned (%)
91.4
Duplicates removed (%)
1.8
Number of peaks
551 (qval < 1E-05)

hg19

Number of total reads
23682993
Reads aligned (%)
90.3
Duplicates removed (%)
3.0
Number of peaks
742 (qval < 1E-05)

Base call quality data from DBCLS SRA