Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57BL/6
cell type
embryonic stem cells
genotype/variation
wild type
chip antibody
no IP

Sequenced DNA Library

library_name
GSM585235: Eed WT Input DNA replicate 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
18640925
Reads aligned (%)
96.9
Duplicates removed (%)
7.6
Number of peaks
632 (qval < 1E-05)

mm9

Number of total reads
18640925
Reads aligned (%)
96.8
Duplicates removed (%)
7.8
Number of peaks
641 (qval < 1E-05)

Base call quality data from DBCLS SRA