SRX028524
GSM608038: tissue.H3K4me3.IP.rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
Spleen FFPE sections of leukemic blasts-injected mice, H3K4me3 ChIP
strain
129/SvEv
tissue
spleen
sample type
tissue
antibody
anti-H3K4me3
antibody vendor
Active Motif

Sequenced DNA Library

library_name
GSM608038: tissue.H3K4me3.IP.rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17472040
Reads aligned (%)
82.0
Duplicates removed (%)
14.0
Number of peaks
2921 (qval < 1E-05)

mm9

Number of total reads
17472040
Reads aligned (%)
81.9
Duplicates removed (%)
14.2
Number of peaks
2667 (qval < 1E-05)

Base call quality data from DBCLS SRA