Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NR3C1
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX027917
GSM604663: GR TA+TNFα p65KD ChIPseq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NR3C1
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
HeLa B2 cells
cell type
immortal cervical cancer cell
cell line
HeLa B2
antibody
anti GR
antibody catalog
MAb-NRhGR-050
antibody manufacturer
Diagenode
treatment
TA+TNFα
genotype/variation
p65KD
Sequenced DNA Library
library_name
GSM604663: GR_TA+TNFα_p65KD_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
33310764
Reads aligned (%)
65.8
Duplicates removed (%)
30.9
Number of peaks
8169 (qval < 1E-05)
hg38
Number of total reads
33310764
Reads aligned (%)
67.3
Duplicates removed (%)
29.7
Number of peaks
8049 (qval < 1E-05)
Base call quality data from
DBCLS SRA