Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa B2 cells
cell type
immortal cervical cancer cell
cell line
HeLa B2
antibody
anti p65
antibody catalog
sc-372
antibody manufacturer
Santa Cruz Biotechnologies
treatment
TA+TNFα
genotype/variation
WT

Sequenced DNA Library

library_name
GSM604659: p65_TA+TNFα_WT_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
20338386
Reads aligned (%)
90.1
Duplicates removed (%)
7.3
Number of peaks
6968 (qval < 1E-05)

hg38

Number of total reads
20338386
Reads aligned (%)
92.1
Duplicates removed (%)
6.1
Number of peaks
6949 (qval < 1E-05)

Base call quality data from DBCLS SRA