SRX027904
GSM604650: GR TNFα WT ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa B2 cells
cell type
immortal cervical cancer cell
cell line
HeLa B2
antibody
anti GR
antibody catalog
MAb-NRhGR-050
antibody manufacturer
Diagenode
treatment
TNFα
genotype/variation
WT

Sequenced DNA Library

library_name
GSM604650: GR_TNFα_WT_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16137251
Reads aligned (%)
96.8
Duplicates removed (%)
3.5
Number of peaks
442 (qval < 1E-05)

hg19

Number of total reads
16137251
Reads aligned (%)
96.0
Duplicates removed (%)
4.6
Number of peaks
621 (qval < 1E-05)

Base call quality data from DBCLS SRA