SRX027494
GSM602303: NEC H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuroectodermal sphere cells (NEC) derived from H9 ESC
cell line
NEC
chip antibody
H3K4me1

Sequenced DNA Library

library_name
GSM602303: NEC_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34520450
Reads aligned (%)
79.4
Duplicates removed (%)
5.0
Number of peaks
76185 (qval < 1E-05)

hg19

Number of total reads
34520450
Reads aligned (%)
79.2
Duplicates removed (%)
5.1
Number of peaks
76036 (qval < 1E-05)

Base call quality data from DBCLS SRA