SRX027492
GSM602301: NEC H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuroectodermal sphere cells (NEC) derived from H9 ESC
cell line
NEC
chip antibody
H3K27me3

Sequenced DNA Library

library_name
GSM602301: NEC_H3K27me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35145045
Reads aligned (%)
81.0
Duplicates removed (%)
4.2
Number of peaks
8196 (qval < 1E-05)

hg19

Number of total reads
35145045
Reads aligned (%)
80.7
Duplicates removed (%)
4.9
Number of peaks
8236 (qval < 1E-05)

Base call quality data from DBCLS SRA