SRX027491
GSM602300: NEC input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuroectodermal sphere cells (NEC) derived from H9 ESC
cell line
NEC
chip antibody
input

Sequenced DNA Library

library_name
GSM602300: NEC_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35697441
Reads aligned (%)
77.8
Duplicates removed (%)
2.2
Number of peaks
444 (qval < 1E-05)

hg19

Number of total reads
35697441
Reads aligned (%)
77.4
Duplicates removed (%)
2.7
Number of peaks
722 (qval < 1E-05)

Base call quality data from DBCLS SRA