SRX027487
GSM602296: ESC H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Human embryonic stem cells
cell line
H9 ESC
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM602296: ESC_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17211980
Reads aligned (%)
89.1
Duplicates removed (%)
18.6
Number of peaks
33003 (qval < 1E-05)

hg19

Number of total reads
17211980
Reads aligned (%)
89.0
Duplicates removed (%)
18.7
Number of peaks
32847 (qval < 1E-05)

Base call quality data from DBCLS SRA