Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Human embryonic stem cells
cell line
H9 ESC
chip antibody
H3K4me1

Sequenced DNA Library

library_name
GSM602295: ESC_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
20467865
Reads aligned (%)
84.6
Duplicates removed (%)
4.6
Number of peaks
58785 (qval < 1E-05)

hg19

Number of total reads
20467865
Reads aligned (%)
84.4
Duplicates removed (%)
4.8
Number of peaks
58587 (qval < 1E-05)

Base call quality data from DBCLS SRA