SRX027458
GSM602674: Suz12 ChipSeq in human ES cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SUZ12

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC BG03
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
Suz12
antibody catalog number
Abcam AB12073
cell type
BGO3 (feeder free)

Sequenced DNA Library

library_name
GSM602674: Suz12 ChipSeq in human ES cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
12128853
Reads aligned (%)
73.3
Duplicates removed (%)
2.6
Number of peaks
472 (qval < 1E-05)

hg38

Number of total reads
12128853
Reads aligned (%)
74.1
Duplicates removed (%)
2.0
Number of peaks
313 (qval < 1E-05)

Base call quality data from DBCLS SRA