Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

source_name
adult testis
strain
13R/9R cross
genotype/variation
Hop2 -/-
chip antibody
input DNA

Sequenced DNA Library

library_name
GSM602205: Control for M
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
54182861
Reads aligned (%)
96.1
Duplicates removed (%)
10.0
Number of peaks
851 (qval < 1E-05)

mm9

Number of total reads
54182861
Reads aligned (%)
95.9
Duplicates removed (%)
10.0
Number of peaks
971 (qval < 1E-05)

Base call quality data from DBCLS SRA