Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adipocyte
Cell type
Adipocytes
MeSH Description
Cells in the body that store FATS, usually in the form of TRIGLYCERIDES. WHITE ADIPOCYTES are the predominant type and found mostly in the abdominal cavity and subcutaneous tissue. BROWN ADIPOCYTES are thermogenic cells that can be found in newborns of some species and hibernating mammals.

Attributes by original data submitter

Sample

source_name
Adipocytes
strain
Fully differentiated
cell type
Mesenchymal stem cells-derived adipocytes
passages
less than 7
chip antibody
IgG Control
vendor
Santa Cruz Biotechnology
catalogue number
sc-2027
lot number
J2909

Sequenced DNA Library

library_name
GSM599840: IgG_control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
3926002
Reads aligned (%)
56.2
Duplicates removed (%)
16.6
Number of peaks
85 (qval < 1E-05)

hg19

Number of total reads
3926002
Reads aligned (%)
55.3
Duplicates removed (%)
18.2
Number of peaks
126 (qval < 1E-05)

Base call quality data from DBCLS SRA