Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSF1

Cell type

Cell type Class
Adipocyte
Cell type
Adipocytes
MeSH Description
Cells in the body that store FATS, usually in the form of TRIGLYCERIDES. WHITE ADIPOCYTES are the predominant type and found mostly in the abdominal cavity and subcutaneous tissue. BROWN ADIPOCYTES are thermogenic cells that can be found in newborns of some species and hibernating mammals.

Attributes by original data submitter

Sample

source_name
Adipocytes
strain
Fully differentiated
cell type
Mesenchymal stem cells-derived adipocytes
passages
less than 7
chip antibody
HSF-1
vendor
Santa Cruz Biotechnology
catalogue number
sc-9144X
lot number
L0407

Sequenced DNA Library

library_name
GSM599839: HSF1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
6313910
Reads aligned (%)
31.4
Duplicates removed (%)
16.0
Number of peaks
131 (qval < 1E-05)

hg38

Number of total reads
6313910
Reads aligned (%)
31.7
Duplicates removed (%)
15.6
Number of peaks
111 (qval < 1E-05)

Base call quality data from DBCLS SRA