Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pupae
Cell type
White prepupae
NA
NA

Attributes by original data submitter

Sample

source_name
white prepupae
developmental stage
white prepupae
antibody name
CTCF-C
antibody manufacturer
Renkawitz Lab
antibody catalog
Custom
fraction
ChIP

Sequenced DNA Library

library_name
GSM602326: Dmel_WPP_CTCF_ChIPSeq_1, 2 and 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm3

Number of total reads
17297629
Reads aligned (%)
43.4
Duplicates removed (%)
49.7
Number of peaks
4906 (qval < 1E-05)

dm6

Number of total reads
17297629
Reads aligned (%)
42.9
Duplicates removed (%)
50.3
Number of peaks
4961 (qval < 1E-05)

Base call quality data from DBCLS SRA