Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCC1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervix; adenocarcinoma; epithelial
cell line
HeLa S3 cells (ATCC/National Cell Culture Center)
antibody
anti-BAF155 (H-76), Santa Cruz Biotechnology, sc-10756

Sequenced DNA Library

library_name
GSM601400: BAF155_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
55542657
Reads aligned (%)
65.8
Duplicates removed (%)
6.0
Number of peaks
8905 (qval < 1E-05)

hg38

Number of total reads
55542657
Reads aligned (%)
66.6
Duplicates removed (%)
5.3
Number of peaks
8844 (qval < 1E-05)

Base call quality data from DBCLS SRA