SRX027270
GSM601398: Ini1 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCB1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervix; adenocarcinoma; epithelial
cell line
HeLa S3 cells (ATCC/National Cell Culture Center)
antibody
anti-Ini1 (C-20), Santa Cruz Biotechnology, sc-16189

Sequenced DNA Library

library_name
GSM601398: Ini1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
38808032
Reads aligned (%)
82.4
Duplicates removed (%)
6.4
Number of peaks
11768 (qval < 1E-05)

hg38

Number of total reads
38808032
Reads aligned (%)
82.8
Duplicates removed (%)
6.0
Number of peaks
11874 (qval < 1E-05)

Base call quality data from DBCLS SRA