Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Supt5
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
SRX027109
GSM594827: ActivatedBCell Spt5 rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Supt5
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
ActivatedBCell_Spt5
strain
C57BL/6
cell type
in vitro activated B cells
chip target
Spt5
chip antibody
Santa Cruz Biotechnology anti-Spt5 (H300)
Sequenced DNA Library
library_name
GSM594827: ActivatedBCell_Spt5_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
15792186
Reads aligned (%)
71.8
Duplicates removed (%)
39.7
Number of peaks
6967 (qval < 1E-05)
mm9
Number of total reads
15792186
Reads aligned (%)
71.7
Duplicates removed (%)
39.8
Number of peaks
6956 (qval < 1E-05)
Base call quality data from
DBCLS SRA