SRX027109
GSM594827: ActivatedBCell Spt5 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Supt5

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
ActivatedBCell_Spt5
strain
C57BL/6
cell type
in vitro activated B cells
chip target
Spt5
chip antibody
Santa Cruz Biotechnology anti-Spt5 (H300)

Sequenced DNA Library

library_name
GSM594827: ActivatedBCell_Spt5_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15792186
Reads aligned (%)
71.8
Duplicates removed (%)
39.7
Number of peaks
6967 (qval < 1E-05)

mm9

Number of total reads
15792186
Reads aligned (%)
71.7
Duplicates removed (%)
39.8
Number of peaks
6956 (qval < 1E-05)

Base call quality data from DBCLS SRA