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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Mixed embryo
ATCC
MeSH
RIKEN BRC
SRX027097
GSM596154: seq-AB46540 NIgG N2 MXemb 2 A EE1432
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA
Attributes by original data submitter
Sample
source_name
Caenorhabditis elegans_N2_MXemb
strain
N2
Stage
MXemb
chip antibody
NIgG
antibody manufacturer
Abcam
Sequenced DNA Library
library_name
GSM596154: seq-AB46540_NIgG_N2_MXemb_2_A_EE1432
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
4371299
Reads aligned (%)
75.8
Duplicates removed (%)
26.7
Number of peaks
2038 (qval < 1E-05)
ce10
Number of total reads
4371299
Reads aligned (%)
75.8
Duplicates removed (%)
26.7
Number of peaks
2036 (qval < 1E-05)
Base call quality data from
DBCLS SRA