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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: CD34+
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX026923
Chromatin accessibility assay of human CD34 Primary Cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
CD34+
NA
NA
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD34 Primary Cells
MARKERS
CD34+
DONOR_ID
RO 01520
DONOR_AGE
50 years
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000837
Sequenced DNA Library
library_name
DS12785
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
54262609
Reads aligned (%)
82.9
Duplicates removed (%)
30.2
Number of peaks
89648 (qval < 1E-05)
hg19
Number of total reads
54262609
Reads aligned (%)
82.4
Duplicates removed (%)
31.5
Number of peaks
92845 (qval < 1E-05)
Base call quality data from
DBCLS SRA