SRX026908
GSM594608: MCF7-input-DNA-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cell line
cell line
MCF7
chromatin ip antibody
total-DNA
chromatin ip antibody description
none
analysis batch
17

Sequenced DNA Library

library_name
GSM594608: MCF7-input-DNA-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28349489
Reads aligned (%)
80.3
Duplicates removed (%)
8.2
Number of peaks
4478 (qval < 1E-05)

hg19

Number of total reads
28349489
Reads aligned (%)
79.0
Duplicates removed (%)
10.4
Number of peaks
4510 (qval < 1E-05)

Base call quality data from DBCLS SRA