SRX026905
GSM594605: T24 ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRIM24

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cell line
cell line
MCF7
chromatin ip antibody
T24
chromatin ip antibody description
anti-TRIM24
analysis batch
16,17

Sequenced DNA Library

library_name
GSM594605: T24_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10841751
Reads aligned (%)
53.5
Duplicates removed (%)
89.5
Number of peaks
16 (qval < 1E-05)

hg19

Number of total reads
10841751
Reads aligned (%)
53.3
Duplicates removed (%)
90.1
Number of peaks
15 (qval < 1E-05)

Base call quality data from DBCLS SRA