Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TRIM24

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cell line
cell line
MCF7
chromatin ip antibody
T24
chromatin ip antibody description
anti-TRIM24
analysis batch
16,17

Sequenced DNA Library

library_name
GSM594604: T24_ChIP-Seq - Estrogen treated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
20425903
Reads aligned (%)
7.2
Duplicates removed (%)
89.2
Number of peaks
64 (qval < 1E-05)

hg38

Number of total reads
20425903
Reads aligned (%)
7.7
Duplicates removed (%)
88.5
Number of peaks
62 (qval < 1E-05)

Base call quality data from DBCLS SRA