Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cell line
cell line
MCF7
chromatin ip antibody
ER
chromatin ip antibody description
anti-estrogen receptor
analysis batch
17

Sequenced DNA Library

library_name
GSM594603: ER_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
20784564
Reads aligned (%)
9.8
Duplicates removed (%)
87.3
Number of peaks
120 (qval < 1E-05)

hg38

Number of total reads
20784564
Reads aligned (%)
10.9
Duplicates removed (%)
86.0
Number of peaks
115 (qval < 1E-05)

Base call quality data from DBCLS SRA