SRX026902
GSM594602: ER ChIP-Seq - Estrogen treated

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 cell line
cell line
MCF7
chromatin ip antibody
ER
chromatin ip antibody description
anti-estrogen receptor
analysis batch
17

Sequenced DNA Library

library_name
GSM594602: ER_ChIP-Seq - Estrogen treated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20876237
Reads aligned (%)
64.0
Duplicates removed (%)
91.8
Number of peaks
1486 (qval < 1E-05)

hg19

Number of total reads
20876237
Reads aligned (%)
63.8
Duplicates removed (%)
92.1
Number of peaks
1444 (qval < 1E-05)

Base call quality data from DBCLS SRA