SRX026881
GSM586972: Normal IgG ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
LN-229
Primary Tissue
Brain
Tissue Diagnosis
Glioma

Attributes by original data submitter

Sample

source_name
Normal IgG ChIP
cell line
LN229 glioma cancer cells
chip seq antibody
Normal IgG antibody

Sequenced DNA Library

library_name
GSM586972: Normal IgG ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
1346711
Reads aligned (%)
44.1
Duplicates removed (%)
35.1
Number of peaks
246 (qval < 1E-05)

hg19

Number of total reads
1346711
Reads aligned (%)
43.9
Duplicates removed (%)
35.5
Number of peaks
255 (qval < 1E-05)

Base call quality data from DBCLS SRA