SRX026880
GSM586971: Sox2 ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Neural
Cell type
LN-229
Primary Tissue
Brain
Tissue Diagnosis
Glioma

Attributes by original data submitter

Sample

source_name
Sox2 ChIP
cell line
LN229 glioma cancer cells
chip seq antibody
Sox2 antibody (Abcam cat#ab59776)

Sequenced DNA Library

library_name
GSM586971: Sox2 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
2313499
Reads aligned (%)
52.9
Duplicates removed (%)
31.0
Number of peaks
390 (qval < 1E-05)

hg19

Number of total reads
2313499
Reads aligned (%)
52.5
Duplicates removed (%)
31.6
Number of peaks
401 (qval < 1E-05)

Base call quality data from DBCLS SRA