SRX026739
GSM593408: H3K4me3 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA

Attributes by original data submitter

Sample

source_name
Wing imaginal discs, H3K4me3 ChIP
tissue
wing imaginal discs
developmental stage
third instar larvae
chip antibody
H3K4me3
chip antibody vendor
Upstate
chip antibody catalog number
07_473
chip antibody lot number
DAM1623866

Sequenced DNA Library

library_name
GSM593408: H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
26808386
Reads aligned (%)
59.5
Duplicates removed (%)
64.6
Number of peaks
7561 (qval < 1E-05)

dm3

Number of total reads
26808386
Reads aligned (%)
61.0
Duplicates removed (%)
62.7
Number of peaks
8017 (qval < 1E-05)

Base call quality data from DBCLS SRA