Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic islets
tissue
Pancreatic islets
chip antibody
anti-Input
antibody manufacturer
none
sonication cycles
15

Sequenced DNA Library

library_name
GSM586890: Islet6_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
51595066
Reads aligned (%)
79.9
Duplicates removed (%)
3.4
Number of peaks
840 (qval < 1E-05)

hg19

Number of total reads
51595066
Reads aligned (%)
79.3
Duplicates removed (%)
4.5
Number of peaks
1140 (qval < 1E-05)

Base call quality data from DBCLS SRA