Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic islets
tissue
Pancreatic islets
chip antibody
anti-CTCF (Millipore)
antibody manufacturer
Millipore
sonication cycles
15

Sequenced DNA Library

library_name
GSM586888: Islet6_CTCF_Millipore
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
31411207
Reads aligned (%)
21.9
Duplicates removed (%)
70.4
Number of peaks
10864 (qval < 1E-05)

hg38

Number of total reads
31411207
Reads aligned (%)
23.7
Duplicates removed (%)
68.3
Number of peaks
10971 (qval < 1E-05)

Base call quality data from DBCLS SRA