SRX026719
GSM586887: Islet6 CTCF Abcam

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic islets
tissue
Pancreatic islets
chip antibody
anti-CTCF (Abcam)
antibody manufacturer
AbCam
sonication cycles
15

Sequenced DNA Library

library_name
GSM586887: Islet6_CTCF_Abcam
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10599376
Reads aligned (%)
86.3
Duplicates removed (%)
15.1
Number of peaks
22852 (qval < 1E-05)

hg19

Number of total reads
10599376
Reads aligned (%)
85.8
Duplicates removed (%)
15.9
Number of peaks
22958 (qval < 1E-05)

Base call quality data from DBCLS SRA