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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: Pancreatic islets
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX026708
GSM586876: Islet3 K4me1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA
Attributes by original data submitter
Sample
source_name
Pancreatic islets
tissue
Pancreatic islets
chip antibody
anti-H3K4me1
antibody manufacturer
AbCam
sonication cycles
15
Sequenced DNA Library
library_name
GSM586876: Islet3_K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
26323790
Reads aligned (%)
93.5
Duplicates removed (%)
1.3
Number of peaks
408 (qval < 1E-05)
hg19
Number of total reads
26323790
Reads aligned (%)
93.0
Duplicates removed (%)
2.0
Number of peaks
731 (qval < 1E-05)
Base call quality data from
DBCLS SRA