Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic islets
tissue
Pancreatic islets
chip antibody
anti-H3K4me1
antibody manufacturer
AbCam
sonication cycles
15

Sequenced DNA Library

library_name
GSM586876: Islet3_K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
26323790
Reads aligned (%)
93.5
Duplicates removed (%)
1.3
Number of peaks
408 (qval < 1E-05)

hg19

Number of total reads
26323790
Reads aligned (%)
93.0
Duplicates removed (%)
2.0
Number of peaks
731 (qval < 1E-05)

Base call quality data from DBCLS SRA