Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic islets
tissue
Pancreatic islets
chip antibody
anti-H3K4me3
antibody manufacturer
AbCam
sonication cycles
20

Sequenced DNA Library

library_name
GSM586873: Islet2_K4me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
25621475
Reads aligned (%)
82.0
Duplicates removed (%)
7.6
Number of peaks
21000 (qval < 1E-05)

hg19

Number of total reads
25621475
Reads aligned (%)
79.9
Duplicates removed (%)
12.3
Number of peaks
21128 (qval < 1E-05)

Base call quality data from DBCLS SRA