SRX026701
GSM586869: Islet1 K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
Pancreatic islets
tissue
Pancreatic islets
chip antibody
anti-H3K4me3
antibody manufacturer
AbCam
sonication cycles
15

Sequenced DNA Library

library_name
GSM586869: Islet1_K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41722019
Reads aligned (%)
77.0
Duplicates removed (%)
6.5
Number of peaks
31636 (qval < 1E-05)

hg19

Number of total reads
41722019
Reads aligned (%)
74.9
Duplicates removed (%)
10.1
Number of peaks
30853 (qval < 1E-05)

Base call quality data from DBCLS SRA