SRX026653
GSM585604: CD34+ nr29 ERG(SantaCruz sc353 C20) no

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ nr29 (normal)
cell type
hematopoietic cell
disease state
normal
treatment
no
antibody
ERG
antibody vendor
SantaCruz
antibody catalog number
sc353
antibody lot/batch number
C20

Sequenced DNA Library

library_name
GSM585604: CD34+ nr29_ERG(SantaCruz_sc353_C20)_no
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25802119
Reads aligned (%)
97.6
Duplicates removed (%)
11.3
Number of peaks
33057 (qval < 1E-05)

hg19

Number of total reads
25802119
Reads aligned (%)
96.4
Duplicates removed (%)
13.2
Number of peaks
32797 (qval < 1E-05)

Base call quality data from DBCLS SRA