SRX026652
GSM585603: AML pz229 MethylCap no [42D36AAXX 3]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MethylCap

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
AML pz229 (leukemic)
cell type
hematopoietic cell
disease state
leukemic
treatment
no
antibody
MethylCap
antibody vendor
MethylCap

Sequenced DNA Library

library_name
GSM585603: AML pz229_ MethylCap_no [42D36AAXX_3]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12365064
Reads aligned (%)
95.4
Duplicates removed (%)
18.0
Number of peaks
1370 (qval < 1E-05)

hg19

Number of total reads
12365064
Reads aligned (%)
92.5
Duplicates removed (%)
20.6
Number of peaks
1186 (qval < 1E-05)

Base call quality data from DBCLS SRA