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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ERG
wikigenes
PDBj
CellType: SKNO-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX026639
GSM585590: SKNO-1 ERG(SantaCruz sc353 C20) no
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ERG
Cell type
Cell type Class
Blood
Cell type
SKNO-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
SKNO-1 (leukemic)
cell type
hematopoietic cell
disease state
leukemic
treatment
no
antibody
ERG
antibody vendor
SantaCruz
antibody catalog number
sc353
antibody lot/batch number
C20
Sequenced DNA Library
library_name
GSM585590: SKNO-1_ERG(SantaCruz_sc353_C20)_no
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
22445248
Reads aligned (%)
77.9
Duplicates removed (%)
19.4
Number of peaks
39985 (qval < 1E-05)
hg38
Number of total reads
22445248
Reads aligned (%)
78.7
Duplicates removed (%)
19.0
Number of peaks
40135 (qval < 1E-05)
Base call quality data from
DBCLS SRA