SRX026639
GSM585590: SKNO-1 ERG(SantaCruz sc353 C20) no

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Blood
Cell type
SKNO-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
SKNO-1 (leukemic)
cell type
hematopoietic cell
disease state
leukemic
treatment
no
antibody
ERG
antibody vendor
SantaCruz
antibody catalog number
sc353
antibody lot/batch number
C20

Sequenced DNA Library

library_name
GSM585590: SKNO-1_ERG(SantaCruz_sc353_C20)_no
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
22445248
Reads aligned (%)
77.9
Duplicates removed (%)
19.4
Number of peaks
39985 (qval < 1E-05)

hg38

Number of total reads
22445248
Reads aligned (%)
78.7
Duplicates removed (%)
19.0
Number of peaks
40135 (qval < 1E-05)

Base call quality data from DBCLS SRA