Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Blood
Cell type
SKNO-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
SKNO-1 (leukemic)
cell type
hematopoietic cell
disease state
leukemic
treatment
no
antibody
AE (A706)
antibody vendor
n/a (commercialization pending manuscript publication)
antibody catalog number
n/a (commercialization pending manuscript publication)
antibody lot/batch number
n/a (commercialization pending manuscript publication)

Sequenced DNA Library

library_name
GSM585589: SKNO-1_AE (A706_Diagenode)_no
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
10186903
Reads aligned (%)
85.9
Duplicates removed (%)
8.0
Number of peaks
20949 (qval < 1E-05)

hg38

Number of total reads
10186903
Reads aligned (%)
86.4
Duplicates removed (%)
7.8
Number of peaks
20940 (qval < 1E-05)

Base call quality data from DBCLS SRA