SRX026539
GSM589246: Control input DNA of ECC1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
ECC-1
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ECC1 breast cancer cells
cell line
ECC1 breast cancer cells
fraction
input DNA

Sequenced DNA Library

library_name
GSM589246: Control input DNA of ECC1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50139196
Reads aligned (%)
44.5
Duplicates removed (%)
1.8
Number of peaks
401 (qval < 1E-05)

hg19

Number of total reads
50139196
Reads aligned (%)
43.9
Duplicates removed (%)
2.9
Number of peaks
520 (qval < 1E-05)

Base call quality data from DBCLS SRA