SRX026538
GSM589245: Control input DNA of Ishikawa

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Ishikawa breast cancer cells
cell line
Ishikawa breast cancer cells
fraction
input DNA

Sequenced DNA Library

library_name
GSM589245: Control input DNA of Ishikawa
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27303689
Reads aligned (%)
54.4
Duplicates removed (%)
2.7
Number of peaks
312 (qval < 1E-05)

hg19

Number of total reads
27303689
Reads aligned (%)
53.9
Duplicates removed (%)
3.6
Number of peaks
547 (qval < 1E-05)

Base call quality data from DBCLS SRA