Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Uterus
Cell type
ECC-1
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ECC1 breast cancer cells
cell line
ECC1 breast cancer cells
fraction
ChIP DNA
antibody manufacturer
Santa Cruz
antibody catalog number
sc-543
antibody
ERα
agent
E2

Sequenced DNA Library

library_name
GSM589243: ERα sequencing in E2 (estradiol) treated ECC1 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
15293757
Reads aligned (%)
61.8
Duplicates removed (%)
7.6
Number of peaks
1346 (qval < 1E-05)

hg38

Number of total reads
15293757
Reads aligned (%)
62.8
Duplicates removed (%)
6.9
Number of peaks
1165 (qval < 1E-05)

Base call quality data from DBCLS SRA