Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Uterus
Cell type
ECC-1
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ECC1 breast cancer cells
cell line
ECC1 breast cancer cells
fraction
ChIP DNA
antibody manufacturer
Santa Cruz
antibody catalog number
sc-543
antibody
ERα
agent
ETOH (ethanol)

Sequenced DNA Library

library_name
GSM589242: ERα sequencing in ETOH (ethanol) treated ECC1 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
21134429
Reads aligned (%)
64.1
Duplicates removed (%)
5.3
Number of peaks
1134 (qval < 1E-05)

hg38

Number of total reads
21134429
Reads aligned (%)
65.0
Duplicates removed (%)
4.6
Number of peaks
911 (qval < 1E-05)

Base call quality data from DBCLS SRA