SRX026534
GSM589241: ERα sequencing in E2 (estradiol) treated Ishikawa cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Uterus
Cell type
Ishikawa
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Ishikawa breast cancer cells
cell line
Ishikawa breast cancer cells
fraction
ChIP DNA
antibody manufacturer
Santa Cruz
antibody catalog number
sc-543
antibody
ERα
agent
E2

Sequenced DNA Library

library_name
GSM589241: ERα sequencing in E2 (estradiol) treated Ishikawa cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29355816
Reads aligned (%)
48.9
Duplicates removed (%)
3.6
Number of peaks
1560 (qval < 1E-05)

hg19

Number of total reads
29355816
Reads aligned (%)
48.4
Duplicates removed (%)
4.4
Number of peaks
1862 (qval < 1E-05)

Base call quality data from DBCLS SRA